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Database and information hub for forensic X-chromosomal markers

Marker DXS101

Create date:	Jun 25, 2009 12:18:14 PM
Last update:	Jul 4, 2012 11:18:27 AM

Cytogenetic localisation:	q 22.10
Physical localisation NCBI 36:	101.300
Rutgers Map v.2:	116.15

Reference:	Edelmann J, Szibor R (2001) DXS101: a highly polymorphic X-linked STR. Internat...

Primer

PrimerF:

5' -

ACT CTA AAT CAG TCC AAA TAT CT

- 3'

PrimerR:

5' -

AAA TCA CTC CAT GGC ACA TGT AT

- 3'

Typical structure

Allele	bps	Sequence composition
15	182	Pr.1-N38-(CTT)6-(ATT)9-N53-Pr.2
16	185	Pr.1-N38-(CTT)6-(ATT)10-N53-Pr.2
18	191	Pr.1-N38-(CTT)8-(ATT)10-N53-Pr.2
21	200	Pr.1-N38-(CTT)17-(ATT)4-N53-Pr.2
22	203	Pr.1-N38-(CTT)16-(ATT)6-N53-Pr.2
23	206	Pr.1-N38-(CTT)15-(ATT)7-N53-Pr.2
24	209	Pr.1-N38-(CTT)15-(ATT)9-N53-Pr.2
25	212	Pr.1-N38-(CTT)13-(ATT)12-N53-Pr.2
26	215	Pr.1-N38-(CTT)14-(ATT)12-N53-Pr.2
28	221	Pr.1-N38-(CTT)17-(ATT)11-N53-Pr.2
30	227	Pr.1-N38-(CTT)19-(ATT)11-N53-Pr.2

Comment:

(Allele 24 with four isoallels); N= Nucleotide

References:

Edelmann J, Szibor R (2001) DXS101: a highly polymorphic X-linked STR. Internat...

Cell line DNA	Allele
K562 (BRL)	24
K562 (Promega)	23, 24
NA3657	24
NA9947A	24, 26
NA9948	25

References:

Szibor R, Edelmann J, Hering S, Plate I, Wittig H, Roewer L, Wiegand P, Cali F,...

Population data

The values of the evaluation parameters presented in the following table are calculated live utilizing the population data presented in the corresponding reference. For this reason it may happen that the numbers differ from the figures given in the reference. Click here to view the equations our calculations are based on.

ID	Population	Reference	PIC	HET	MEC Krüger	MEC Kishida	MEC Desmarais	MEC Desmarais duo	PD female	PD male
1	Austria	Wiegand...	0.8519	0.8654	0.7298	0.8475	0.8519	0.7544	0.9684	0.8654
2	Chinese	Tabbada...	0.7687	0.7980	0.6038	0.7687	0.7687	0.6428	0.9299	0.7980
3	Finland	Vauhkon...	0.8246	0.8397	0.6968	0.8246	0.8246	0.7178	0.9591	0.8397
4	Germany	Fracass...	0.8703	0.8812	0.7628	0.8692	0.8703	0.7808	0.9750	0.8812
5	Germany	Tabbada...	0.8707	0.8817	0.7645	0.8713	0.8707	0.7812	0.9750	0.8817
6	Germany (East)	Edelman...	0.8707	0.8816	0.7622	0.8685	0.8707	0.7814	0.9752	0.8816
7	Germany (East)	Edelman...	0.8798	0.8892	0.7789	0.8787	0.8798	0.7949	0.9783	0.8892
8	Germany (East)	Edelman...	0.8784	0.8880	0.7765	0.8773	0.8784	0.7929	0.9779	0.8880
9	Germany (North East)	Poetsch...	0.8635	0.8755	0.7512	0.8624	0.8635	0.7709	0.9725	0.8755
10	Germany (South)	Wiegand...	0.8650	0.8763	0.7571	0.8661	0.8650	0.7734	0.9734	0.8763
11	Italy (Tuscany)	Toni C,...	0.8675	0.8789	0.7609	0.8697	0.8675	0.7765	0.9740	0.8789
12	Japanese	Tabbada...	0.7793	0.8049	0.6214	0.7793	0.7793	0.6562	0.9363	0.8049
13	Korea	Shin KJ...	0.7928	0.8170	0.6404	0.7928	0.7928	0.6738	0.9424	0.8170
14	Korea	Shin SH...	0.7934	0.8180	0.6445	0.7980	0.7934	0.6743	0.9423	0.8180
15	Latvia	Poetsch...	0.8395	0.8528	0.7194	0.8399	0.8395	0.7382	0.9650	0.8528
16	Philippine	Tabbada...	0.7600	0.7884	0.5970	0.7602	0.7600	0.6330	0.9268	0.7884
17	Portugal (North)	Pereira...	0.8747	0.8855	0.7697	0.8747	0.8747	0.7868	0.9761	0.8855
18	Spain (Cantabria)	Zarrabe...	0.8626	0.8744	0.7497	0.8604	0.8626	0.7699	0.9724	0.8744
19	Spain (Valencia)	Aler M,...	0.8418	0.8561	0.7199	0.8415	0.8418	0.7408	0.9650	0.8561
20	Taiwan	Chen MY...	0.7693	0.7952	0.6119	0.7704	0.7693	0.6445	0.9321	0.7952
21	Thai	Tabbada...	0.7878	0.8120	0.6354	0.7880	0.7878	0.6678	0.9404	0.8120

ID	Population	Ethnic specification	Reference	n*	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32
1	Austria	Caucasian (European)	Wiegand...	270 females		0.0230	0.0040		0.0900	0.0260	0.0150	0.0110	0.0150	0.0600	0.2370	0.1690	0.1540	0.0860	0.0640	0.0340	0.0080
2	Chinese	Asian	Tabbada...	90									0.0500	0.1500	0.2600	0.2700	0.1800	0.0600	0.0200	0.0100
3	Finland	Caucasian	Vauhkon...	103		0.0410	0.0070		0.0960	0.0270	0.0270	0.0340	0.0140	0.0410	0.3080	0.1920	0.0890	0.0550	0.0410	0.0210	0.0070
4	Germany	Area of Münster	Fracass...	217 both		0.0360	0.0030		0.0650	0.0460	0.0200	0.0290	0.0200	0.0820	0.2060	0.1760	0.1370	0.0650	0.0750	0.0230	0.0160
5	Germany	Caucasian (European)	Tabbada...	105		0.0313			0.0938	0.0313	0.0188	0.0313	0.0063	0.0625	0.1688	0.2000	0.1375	0.0938	0.0688	0.0250	0.0250		0.0063
6	Germany (East)	Caucasian (European)	Edelman...	216 males		0.0370	0.0050		0.0780	0.0690	0.0140	0.0420	0.0140	0.0460	0.2170	0.1390	0.1480	0.0880	0.0740	0.0090	0.0180
7	Germany (East)	Caucasian (European)	Edelman...	348 females	0.0030	0.0460	0.0060	0.0030	0.0860	0.0400	0.0110	0.0290	0.0240	0.0720	0.2100	0.1610	0.1030	0.0760	0.0690	0.0330	0.0260		0.0010
8	Germany (East)	Caucasian (European)	Edelman...	564	0.0020	0.0440	0.0050	0.0020	0.0840	0.0470	0.0120	0.0320	0.0220	0.0660	0.2120	0.1560	0.1140	0.0790	0.0700	0.0270	0.0240		0.0010
9	Germany (North East)	Caucasian (European)	Poetsch...	205	0.0030	0.0160		0.0100	0.0620	0.0460	0.0360	0.0100	0.0130	0.0850	0.2000	0.1770	0.1670	0.0690	0.0690	0.0160	0.0200
10	Germany (South)	Caucasian (European)	Wiegand...	214 females		0.0330	0.0050	0.0050	0.0790	0.0470	0.0190	0.0330	0.0230	0.0560	0.2290	0.1640	0.1400	0.0890	0.0330	0.0230	0.0230
11	Italy (Tuscany)	Caucasian	Toni C,...	160		0.0380	0.0040	0.0040	0.1130	0.0670	0.0170	0.0330	0.0080	0.0290	0.2170	0.1210	0.1540	0.0630	0.0960	0.0380
12	Japanese	Asian	Tabbada...	95 males									0.0632	0.1368	0.3158	0.2000	0.1368	0.1158	0.0211	0.0105
13	Korea	Asian (Korean)	Shin KJ...	300								0.0110	0.0380	0.1090	0.2780	0.2130	0.1800	0.1130	0.0400	0.0070	0.0110
14	Korea	Asian (Korean)	Shin SH...	401						0.0020		0.0050	0.0360	0.1460	0.2560	0.2310	0.1710	0.0970	0.0390	0.0160	0.0040	0.0010
15	Latvia	Caucasian (European)	Poetsch...	152		0.0068		0.0135	0.0676	0.0541	0.0203	0.0541	0.0338	0.0473	0.1824	0.2905	0.0946	0.0541	0.0541		0.0135	0.0068	0.0068
16	Philippine	Asian	Tabbada...	115							0.0058	0.0058	0.0405	0.1792	0.3353	0.2254	0.0983	0.0578	0.0173	0.0347
17	Portugal (North)	all	Pereira...	347 males	0.0029	0.0202	0.0029	0.0058	0.0836	0.0461	0.0173	0.0288	0.0288	0.0922	0.1729	0.1527	0.1527	0.1268	0.0346	0.0259	0.0058
18	Spain (Cantabria)	Caucasian (European)	Zarrabe...	131		0.0550		0.0050	0.0850	0.0750	0.0250	0.0150	0.0250	0.0450	0.1560	0.2210	0.1710	0.0300	0.0400	0.0250	0.0250
19	Spain (Valencia)	all	Aler M,...	145 females		0.0241		0.0069	0.0517	0.0448	0.0172	0.0379	0.0241	0.0655	0.1931	0.2586	0.1483	0.0655	0.0276	0.0276	0.0069
20	Taiwan	all	Chen MY...	448					0.0020	0.0070		0.0090	0.0430	0.1290	0.3410	0.1970	0.1650	0.0550	0.0240	0.0150	0.0050	0.0070	0.0020
21	Thai	Asian	Tabbada...	157						0.0051		0.0152	0.0556	0.1061	0.2525	0.2828	0.1414	0.0909	0.0354	0.0101	0.0051

n* - If no information on the sex of the studied individuals is indicated, both sexes were examined.

References

Note

No data.

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