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Marker DXS7132
Create date: |
Jun 25, 2009 12:18:12 PM |
Last update: |
Jul 13, 2011 9:41:22 AM |
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Linkage group: |
X2 |
Cytogenetic localisation: |
c |
Physical localisation NCBI 36: |
64.572 |
Genetic localisation deCODE: |
80.01 |
Rutgers Map v.2: |
90.75 |
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Reference: |
Edelmann J, Hering, S, Michael, M, Lessig, R, Deichsel, D, Meier-Sundhausen, G,... |
Primer
PrimerF: |
5' - |
GAGCCCATTTTAATAAATCC |
- 3' |
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PrimerR: |
5' - |
GCCAAACTCTATTAGTCAAC |
- 3' |
Typical structure11-17 | 131–155 | PF N19 (TCTA)11-17 N28 PR |
K562 (BRL) | 13 | K562 (Promega) | 13 | NA3657 | 12 | NA9947A | 12, 12 | NA9948 | 13 |
Population dataThe values of the evaluation parameters presented in the following table are calculated live utilizing the population data presented in the corresponding reference. For this reason it may happen that the numbers differ from the figures given in the reference. Click here to view the equations our calculations are based on.1 | Belo Horizonte, Brazil | Genetic... | 0.6983 | 0.7389 | 0.5126 | 0.6983 | 0.6983 | 0.5593 | 0.8912 | 0.7389 | 2 | China (Guangdong) | Genetic... | 0.6990 | 0.7390 | 0.5135 | 0.6990 | 0.6990 | 0.5599 | 0.8919 | 0.7390 | 3 | Germany | Becker ... | 0.6936 | 0.7372 | 0.5041 | 0.6935 | 0.6936 | 0.5539 | 0.8873 | 0.7372 | 4 | Germany | Becker ... | 0.7023 | 0.7454 | 0.5131 | 0.7020 | 0.7023 | 0.5637 | 0.8920 | 0.7454 | 5 | Germany | Becker ... | 0.6972 | 0.7406 | 0.5077 | 0.6968 | 0.6972 | 0.5580 | 0.8893 | 0.7406 | 6 | Germany | Edelman... | 0.6874 | 0.7317 | 0.4965 | 0.6874 | 0.6874 | 0.5468 | 0.8837 | 0.7317 | 7 | Ghana | Becker ... | 0.6986 | 0.7418 | 0.5093 | 0.6985 | 0.6986 | 0.5594 | 0.8901 | 0.7418 | 8 | Hungary | Zalán A... | 0.7070 | 0.7477 | 0.5204 | 0.7070 | 0.7070 | 0.5688 | 0.8956 | 0.7477 | 9 | Japan (Fukuoka) | Becker ... | 0.6460 | 0.6962 | 0.4546 | 0.6461 | 0.6460 | 0.5029 | 0.8575 | 0.6962 | 10 | Korea | Shin SH... | 0.7315 | 0.7679 | 0.5499 | 0.7291 | 0.7315 | 0.5975 | 0.9097 | 0.7679 | 11 | Poland | Pepinsk... | 0.6644 | 0.7146 | 0.4683 | 0.6645 | 0.6644 | 0.5217 | 0.8684 | 0.7146 | 12 | Portugal (North) | Pereira... | 0.6933 | 0.7375 | 0.5029 | 0.6934 | 0.6933 | 0.5534 | 0.8869 | 0.7375 | 13 | Rio de Janeiro, Brazil | Genetic... | 0.7072 | 0.7460 | 0.5244 | 0.7072 | 0.7072 | 0.5696 | 0.8966 | 0.7460 | 14 | Spain (Valencia) | Aler M,... | 0.7117 | 0.7525 | 0.5245 | 0.7115 | 0.7117 | 0.5740 | 0.8980 | 0.7525 | 15 | São Paulo, Brazil | Genetic... | 0.7246 | 0.7623 | 0.5437 | 0.7243 | 0.7246 | 0.5897 | 0.9057 | 0.7623 | 16 | Taiwan | Chen MY... | 0.7163 | 0.7550 | 0.5336 | 0.7163 | 0.7163 | 0.5799 | 0.9013 | 0.7550 | 17 | Vitória, Brazil | Genetic... | 0.7431 | 0.7772 | 0.5693 | 0.7431 | 0.7431 | 0.6119 | 0.9162 | 0.7772 |
1 |
Belo Horizonte, Brazil |
admixed |
Genetic... |
245 |
|
|
|
|
0.0169 |
0.0850 |
0.2406 |
0.3854 |
|
0.2125 |
|
0.0426 |
0.0058 |
0.0112 |
|
|
|
|
2 |
China (Guangdong) |
Asian (Chinese Han) |
Genetic... |
272 both |
|
|
|
|
0.0025 |
0.0875 |
0.1850 |
0.3900 |
|
0.2475 |
|
0.0750 |
|
0.0125 |
|
|
|
|
3 |
Germany |
Caucasian (European) |
Becker ... |
278 females |
|
|
|
|
0.0054 |
0.1011 |
0.2978 |
0.3574 |
|
0.1859 |
|
0.0379 |
|
0.0126 |
|
0.0018 |
|
|
4 |
Germany |
Caucasian (European) |
Becker ... |
439 males |
|
|
|
|
0.0045 |
0.0911 |
0.3075 |
0.3189 |
|
0.2186 |
|
0.0455 |
|
0.0114 |
|
0.0023 |
|
|
5 |
Germany |
Caucasian (European) |
Becker ... |
717 |
|
|
|
|
0.0051 |
0.0977 |
0.3011 |
0.3445 |
|
0.1968 |
|
0.0404 |
|
0.0122 |
|
0.0019 |
|
|
6 |
Germany |
Caucasian (European) |
Edelman... |
412 |
|
|
|
|
0.0120 |
0.0890 |
0.2660 |
0.3790 |
|
0.2110 |
|
0.0360 |
|
0.0070 |
|
|
|
|
7 |
Ghana |
all |
Becker ... |
59 males |
|
|
|
|
0.0175 |
0.1228 |
0.1754 |
0.3333 |
|
0.3158 |
|
0.0351 |
|
|
|
|
|
|
8 |
Hungary |
all |
Zalán A... |
384 |
0.0020 |
|
|
|
0.0020 |
0.1220 |
0.2620 |
0.3590 |
|
0.1930 |
|
0.0510 |
|
0.0070 |
|
|
|
0.0020 |
9 |
Japan (Fukuoka) |
Asian (Japanese) |
Becker ... |
93 males |
|
|
|
|
|
0.0753 |
0.0968 |
0.4086 |
|
0.3441 |
|
0.0538 |
|
0.0215 |
|
|
|
|
10 |
Korea |
Asian (Korean) |
Shin SH... |
401 |
|
|
|
0.0010 |
0.0080 |
0.1140 |
0.2360 |
0.3280 |
|
0.2250 |
|
0.0700 |
|
0.0150 |
|
0.0010 |
|
|
11 |
Poland |
all |
Pepinsk... |
240 |
|
|
|
|
0.0111 |
0.0722 |
0.3306 |
0.3667 |
|
0.1889 |
|
0.0250 |
|
0.0056 |
|
|
|
|
12 |
Portugal (North) |
all |
Pereira... |
347 males |
|
|
|
|
0.0202 |
0.1009 |
0.2911 |
0.3545 |
|
0.2017 |
|
0.0288 |
|
0.0029 |
|
|
|
|
13 |
Rio de Janeiro, Brazil |
admixed |
Genetic... |
261 |
|
|
|
|
0.0074 |
0.0887 |
0.2512 |
0.3768 |
0.0025 |
0.1946 |
0.0025 |
0.0517 |
0.0197 |
|
0.0049 |
|
|
|
14 |
Spain (Valencia) |
all |
Aler M,... |
145 females |
|
|
0.0034 |
|
0.0172 |
0.1414 |
0.2517 |
0.3448 |
|
0.2103 |
|
0.0276 |
|
0.0034 |
|
|
|
|
15 |
São Paulo, Brazil |
admixed |
Genetic... |
250 |
|
|
|
0.0048 |
0.0194 |
0.1044 |
0.2233 |
0.3277 |
|
0.2597 |
0.0024 |
0.0388 |
0.0072 |
0.0097 |
0.0024 |
|
|
|
16 |
Taiwan |
all |
Chen MY... |
414 |
|
0.0020 |
|
|
0.0040 |
0.0860 |
0.2080 |
0.3510 |
|
0.2550 |
|
0.0770 |
|
0.0130 |
|
0.0020 |
|
0.0020 |
17 |
Vitória, Brazil |
admixed |
Genetic... |
245 |
|
|
|
|
0.0222 |
0.1012 |
0.2642 |
0.3012 |
|
0.2197 |
|
0.0519 |
0.0173 |
0.0173 |
|
0.0025 |
0.0025 |
|
n* - If no information on the sex of the studied individuals is indicated, both sexes were examined.
References
- Chen MY, Pu CE (2004) Population data on the X chromosome short tandem repeat loci DXS10011, DXS101...
- Edelmann J, Deichsel D, Hering S, Plate I, Szibor R (2002) Sequence variation and allele nomenclatu...
- Edelmann J, Hering, S, Michael, M, Lessig, R, Deichsel, D, Meier-Sundhausen, G, Roewer, L, Plate, I...
- Shin SH, Yu JS, Park SW, Min GS, Chung KW (2005) Genetic analysis of 18 X-linked short tandem repea...
- Szibor R, Edelmann J, Hering S, Plate I, Wittig H, Roewer L, Wiegand P, Cali F, Romano V, Michael M...
- Turrina S, De Leo D (2003) Population data of three X-chromosomal STRs: DXS7132, DXS7133 and GATA17...
NoteNo data.
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News
Based on the review of december 2018, it has been decided in cooperation with the X working group to remove the PI calculation from this website.
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