|
Marker HPRTB
Primer
PrimerF: |
5' - |
TCTCTATTTCCATCTCTGTCTCC |
- 3' |
PrimerR: |
5' - |
TCACCCCTGTCTATGGTCTCG |
- 3' |
Typical structure9-17 | 144-176 | PF N30 (TCTA)n N34 PR |
Comment: |
Typical Sequence composition, N= Nucleotid, Allele variants are known |
K562 (BRL) | 13 | K562 (Promega) | 13 | NA3657 | 13 | NA9947A | 14, 14 | NA9948 | 14 |
Population dataThe values of the evaluation parameters presented in the following table are calculated live utilizing the population data presented in the corresponding reference. For this reason it may happen that the numbers differ from the figures given in the reference. Click here to view the equations our calculations are based on.1 | Argentina (Buenos Aires) | Sala, A... | 0.7283 | 0.7654 | 0.5458 | 0.7259 | 0.7283 | 0.5938 | 0.9078 | 0.7654 | 2 | Brazil (Pernambuco) | Maurici... | 0.7233 | 0.7612 | 0.5434 | 0.7245 | 0.7233 | 0.5881 | 0.9051 | 0.7612 | 3 | China (Guangdong) | Genetic... | 0.6814 | 0.7234 | 0.4922 | 0.6814 | 0.6814 | 0.5397 | 0.8815 | 0.7234 | 4 | Chinese | Tabbada... | 0.6572 | 0.7084 | 0.4601 | 0.6572 | 0.6572 | 0.5138 | 0.8637 | 0.7084 | 5 | Germany | Becker ... | 0.6974 | 0.7389 | 0.5123 | 0.6970 | 0.6974 | 0.5590 | 0.8904 | 0.7389 | 6 | Germany | Becker ... | 0.6881 | 0.7322 | 0.4989 | 0.6876 | 0.6881 | 0.5481 | 0.8842 | 0.7322 | 7 | Germany | Becker ... | 0.6944 | 0.7367 | 0.5080 | 0.6940 | 0.6944 | 0.5555 | 0.8884 | 0.7367 | 8 | Germany | Edelman... | 0.7372 | 0.7717 | 0.5620 | 0.7372 | 0.7372 | 0.6047 | 0.9134 | 0.7717 | 9 | Germany (Baden-Württenberg) | Szibor ... | 0.7326 | 0.7680 | 0.5512 | 0.7279 | 0.7326 | 0.5992 | 0.9107 | 0.7680 | 10 | Germany (North East) | Poetsch... | 0.7008 | 0.7419 | 0.5158 | 0.7008 | 0.7008 | 0.5625 | 0.8923 | 0.7419 | 11 | Ghana | Becker ... | 0.7654 | 0.7946 | 0.5999 | 0.7653 | 0.7654 | 0.6387 | 0.9286 | 0.7946 | 12 | Hungary | Füredi,... | 0.7178 | 0.7551 | 0.5381 | 0.7178 | 0.7178 | 0.5821 | 0.9027 | 0.7551 | 13 | Hungary | Zalán A... | 0.7117 | 0.7511 | 0.5282 | 0.7106 | 0.7117 | 0.5751 | 0.8987 | 0.7511 | 14 | Italy (Tuscany) | Toni C,... | 0.6924 | 0.7340 | 0.5077 | 0.6924 | 0.6924 | 0.5534 | 0.8877 | 0.7340 | 15 | Japan (Fukuoka) | Becker ... | 0.6135 | 0.6674 | 0.4081 | 0.6008 | 0.6135 | 0.4685 | 0.8354 | 0.6674 | 16 | Japanese | Tabbada... | 0.6137 | 0.6601 | 0.4221 | 0.6138 | 0.6137 | 0.4668 | 0.8381 | 0.6601 | 17 | Korea | Shin KJ... | 0.6356 | 0.6905 | 0.4364 | 0.6368 | 0.6356 | 0.4906 | 0.8493 | 0.6905 | 18 | Korea | Shin SH... | 0.6353 | 0.6807 | 0.4439 | 0.6353 | 0.6353 | 0.4897 | 0.8526 | 0.6807 | 19 | Latvia | Poetsch... | 0.6949 | 0.7375 | 0.5073 | 0.6949 | 0.6949 | 0.5556 | 0.8885 | 0.7375 | 20 | Mexico (Jalisco) | Rangel-... | 0.7345 | 0.7706 | 0.5563 | 0.7346 | 0.7345 | 0.6011 | 0.9112 | 0.7706 | 21 | Philippine | Tabbada... | 0.6263 | 0.6692 | 0.4356 | 0.6264 | 0.6263 | 0.4793 | 0.8477 | 0.6692 | 22 | Poland | Pepinsk... | 0.6980 | 0.7392 | 0.5132 | 0.6980 | 0.6980 | 0.5595 | 0.8908 | 0.7392 | 23 | Spain (Basque country) | Zarrabe... | 0.6904 | 0.7347 | 0.5002 | 0.6904 | 0.6904 | 0.5503 | 0.8853 | 0.7347 | 24 | Spain (Cantabria) | Zarrabe... | 0.7062 | 0.7472 | 0.5185 | 0.7038 | 0.7062 | 0.5684 | 0.8951 | 0.7472 | 25 | Spain (Cantabria) | Zarrabe... | 0.7157 | 0.7560 | 0.5298 | 0.7157 | 0.7157 | 0.5787 | 0.9001 | 0.7560 | 26 | Spain (Valencia) | Aler M,... | 0.6803 | 0.7254 | 0.4892 | 0.6802 | 0.6803 | 0.5391 | 0.8795 | 0.7254 | 27 | Taiwan | Chen MY... | 0.6598 | 0.7095 | 0.4635 | 0.6598 | 0.6598 | 0.5164 | 0.8659 | 0.7095 | 28 | Thai | Tabbada... | 0.7064 | 0.7478 | 0.5200 | 0.7066 | 0.7064 | 0.5684 | 0.8950 | 0.7478 | 29 | United Kingdom | Pai, A.... | 0.7206 | 0.7585 | 0.5402 | 0.7217 | 0.7206 | 0.5849 | 0.9037 | 0.7585 | 30 | USA (Afro-Americans) | Edwards... | 0.7320 | 0.7688 | 0.5531 | 0.7320 | 0.7320 | 0.5984 | 0.9097 | 0.7688 | 31 | USA (Caucasian) | Edwards... | 0.7112 | 0.7509 | 0.5274 | 0.7112 | 0.7112 | 0.5741 | 0.8982 | 0.7509 | 32 | USA (Hispanics) | Edwards... | 0.6775 | 0.7246 | 0.4837 | 0.6775 | 0.6775 | 0.5358 | 0.8770 | 0.7246 |
1 |
Argentina (Buenos Aires) |
Caucasoids |
Sala, A... |
278 |
|
|
|
|
0.0320 |
0.1790 |
|
0.3160 |
|
0.2840 |
0.1370 |
0.0470 |
0.0030 |
|
|
|
2 |
Brazil (Pernambuco) |
all |
Maurici... |
254 |
|
|
|
0.0160 |
0.0200 |
0.1460 |
|
0.2950 |
|
0.3190 |
0.1650 |
0.0240 |
0.0160 |
|
|
|
3 |
China (Guangdong) |
Asian (Chinese Han) |
Genetic... |
272 both |
|
|
|
|
|
0.1000 |
|
0.2225 |
|
0.4175 |
0.2000 |
0.0525 |
0.0075 |
|
|
|
4 |
Chinese |
Asian |
Tabbada... |
90 |
|
|
|
|
|
0.0700 |
|
0.3300 |
|
0.3800 |
0.1800 |
0.0300 |
0.0100 |
|
|
|
5 |
Germany |
Caucasian (European) |
Becker ... |
278 females |
|
|
|
0.0054 |
0.0072 |
0.1299 |
0.0054 |
0.3537 |
|
0.3212 |
0.1155 |
0.0487 |
0.0126 |
|
|
|
6 |
Germany |
Caucasian (European) |
Becker ... |
439 males |
|
|
|
0.0091 |
0.0023 |
0.1366 |
0.0045 |
0.3530 |
|
0.3280 |
0.1252 |
0.0341 |
0.0068 |
|
|
|
7 |
Germany |
Caucasian (European) |
Becker ... |
717 |
|
|
|
0.0066 |
0.0055 |
0.1322 |
0.0051 |
0.3535 |
|
0.3235 |
0.1187 |
0.0438 |
0.0107 |
|
|
|
8 |
Germany |
Caucasian (European) |
Edelman... |
335 |
|
|
|
0.0100 |
0.0190 |
0.1160 |
|
0.2760 |
|
0.3220 |
0.1690 |
0.0760 |
0.0120 |
|
|
|
9 |
Germany (Baden-Württenberg) |
Caucasian (European) |
Szibor ... |
643 |
|
|
|
0.0050 |
0.0140 |
0.1310 |
|
0.2870 |
|
0.3220 |
0.1520 |
0.0730 |
0.0120 |
|
|
|
10 |
Germany (North East) |
Caucasian (European) |
Poetsch... |
205 |
|
|
|
0.0030 |
0.0070 |
0.1180 |
|
0.3410 |
|
0.3280 |
0.1110 |
0.0890 |
0.0030 |
|
|
|
11 |
Ghana |
all |
Becker ... |
59 males |
|
|
|
0.0508 |
|
0.1017 |
|
0.3051 |
|
0.2373 |
0.1695 |
0.1186 |
0.0169 |
|
|
|
12 |
Hungary |
all |
Füredi,... |
242 |
|
|
0.0050 |
0.0200 |
0.0100 |
0.1320 |
|
0.3530 |
|
0.2840 |
0.1370 |
0.0540 |
0.0050 |
|
|
|
13 |
Hungary |
all |
Zalán A... |
384 |
|
|
0.0040 |
0.0220 |
0.0050 |
0.1130 |
0.0020 |
0.3220 |
|
0.3240 |
0.1580 |
0.0440 |
0.0050 |
|
|
|
14 |
Italy (Tuscany) |
Caucasian |
Toni C,... |
160 |
|
|
|
|
0.0080 |
0.0170 |
|
0.1170 |
0.0040 |
0.3750 |
0.3080 |
0.1210 |
0.0420 |
0.0080 |
|
|
15 |
Japan (Fukuoka) |
Asian (Japanese) |
Becker ... |
93 males |
|
|
|
|
|
0.0645 |
|
0.3226 |
|
0.4624 |
0.0968 |
0.0323 |
0.0108 |
|
|
|
16 |
Japanese |
Asian |
Tabbada... |
95 males |
|
|
|
|
|
0.0316 |
|
0.2421 |
|
0.5053 |
0.1474 |
0.0526 |
0.0211 |
|
|
|
17 |
Korea |
Asian (Korean) |
Shin KJ... |
300 |
|
|
|
|
|
0.0360 |
|
0.3130 |
|
0.4160 |
0.1890 |
0.0360 |
0.0110 |
|
|
|
18 |
Korea |
Asian (Korean) |
Shin SH... |
401 |
|
|
|
|
0.0040 |
0.0510 |
|
0.2490 |
|
0.4780 |
0.1490 |
0.0630 |
0.0060 |
|
|
|
19 |
Latvia |
Caucasian (European) |
Poetsch... |
152 |
|
|
|
0.0068 |
0.0135 |
0.1486 |
|
0.3649 |
|
0.2973 |
0.1351 |
0.0135 |
0.0068 |
0.0135 |
|
|
20 |
Mexico (Jalisco) |
all |
Rangel-... |
173 |
|
|
0.0043 |
0.0043 |
0.0086 |
0.0730 |
|
0.2790 |
|
0.3047 |
0.2017 |
0.1116 |
0.0129 |
|
|
|
21 |
Philippine |
Asian |
Tabbada... |
115 |
|
|
|
|
|
0.0983 |
|
0.2139 |
|
0.5029 |
0.1445 |
0.0405 |
|
|
|
|
22 |
Poland |
all |
Pepinsk... |
240 |
|
|
|
0.0222 |
|
0.1111 |
|
0.3639 |
|
0.3056 |
0.1417 |
0.0444 |
0.0083 |
0.0028 |
|
|
23 |
Spain (Basque country) |
Caucasian (European) |
Zarrabe... |
147 |
|
|
|
0.0050 |
|
0.0140 |
|
0.1450 |
|
0.3180 |
0.3500 |
0.1400 |
0.0280 |
|
|
|
24 |
Spain (Cantabria) |
Caucasian (European) |
Zarrabe... |
244 |
|
|
|
0.0080 |
|
0.0080 |
|
0.1460 |
|
0.3360 |
0.3110 |
0.1430 |
0.0360 |
0.0060 |
0.0020 |
0.0020 |
25 |
Spain (Cantabria) |
Caucasian (European) |
Zarrabe... |
131 |
|
|
|
0.0150 |
|
0.0050 |
|
0.1720 |
|
0.3180 |
0.2930 |
0.1620 |
0.0300 |
0.0050 |
|
|
26 |
Spain (Valencia) |
all |
Aler M,... |
145 females |
|
|
|
|
|
|
|
0.1172 |
0.0103 |
0.3828 |
0.3000 |
0.1517 |
0.0345 |
0.0034 |
|
|
27 |
Taiwan |
all |
Chen MY... |
571 |
|
|
|
|
|
0.0736 |
|
0.2995 |
|
0.3993 |
0.1856 |
0.0385 |
0.0035 |
|
|
|
28 |
Thai |
Asian |
Tabbada... |
157 |
|
|
|
|
|
0.1263 |
|
0.2980 |
0.0051 |
0.3384 |
0.1768 |
0.0354 |
0.0202 |
|
|
|
29 |
United Kingdom |
all |
Pai, A.... |
364 |
|
|
|
0.0030 |
0.0230 |
0.1600 |
|
0.3380 |
|
0.2820 |
0.1370 |
0.0530 |
0.0050 |
|
|
|
30 |
USA (Afro-Americans) |
all |
Edwards... |
178 |
0.0040 |
|
|
0.0180 |
0.0150 |
0.0690 |
|
0.2570 |
|
0.3040 |
0.2460 |
0.0830 |
0.0040 |
|
|
|
31 |
USA (Caucasian) |
Caucasian |
Edwards... |
168 |
|
0.0020 |
|
0.0050 |
0.0100 |
0.1340 |
|
0.3430 |
|
0.2950 |
0.1560 |
0.0430 |
0.0120 |
|
|
|
32 |
USA (Hispanics) |
all |
Edwards... |
169 |
|
|
|
0.0050 |
|
0.0620 |
|
0.3000 |
|
0.3710 |
0.2000 |
0.0620 |
|
|
|
|
n* - If no information on the sex of the studied individuals is indicated, both sexes were examined.
References
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NoteNo data.
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News
Based on the review of december 2018, it has been decided in cooperation with the X working group to remove the PI calculation from this website.
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