|
Marker DXS6809
Primer
| PrimerF: |
5' - |
TGA ACC TTC CTA GCT CAGGA |
- 3' |
| PrimerR: |
5' - |
GCA AAA TTG GAT TCT CCA GA |
- 3' |
Typical structure| 27,28,29 | 235,239,243 | PF20-N37-(CTAT)7-(ATCT)3-N9-(TATC)3-(ATCT)3-N10-(ATCT)11-13 -N31-PR20 | | 30 | 247 | PF20-N37-(CTAT)8-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)11-N31-PR20 | | 31 | 251 | PF20-N37-(CTAT)9-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)11-N31-PR20 | | 32 | 255 | PF20-N37-(CTAT)8-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)13-N31-PR20 | | 33 | 259 | PF20-N37-(CTAT)9-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)13-N31-PR20 | | 34 | 263 | PF20-N37-(CTAT)9-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)14-N31-PR20 | | 35 | 267 | PF20-N37-(CTAT)9-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)15-N31-PR20 | | 36 | 271 | PF20-N37-(CTAT)9-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)16-N31-PR20 | | 37 | 275 | PF20-N37-(CTAT)9-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)17-N31-PR20 | | 38 | 279 | PF20-N37-(CTAT)10-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)17-N31-PR20 |
| Comment: |
(Allele 30 with three isoalleles), N= Nucleotide |
| K562 (BRL) | 34 | | K562 (Promega) | 34 | | NA3657 | 29 | | NA9947A | 31, 34 | | NA9948 | 31 |
| References: |
Szibor R, Edelmann J, Hering S, Plate I, Wittig H, Roewer L, Wiegand P, Cali F,...
Edelmann J, Deichsel D, Plate I, Kaser M, Szibor R (2003) Validation of the X-c...
|
Population dataThe values of the evaluation parameters presented in the following table are calculated live utilizing the population data presented in the corresponding reference. For this reason it may happen that the numbers differ from the figures given in the reference. Click here to view the equations our calculations are based on.| 1 | Belo Horizonte, Brazil | Genetic... | 0.8080 | 0.8290 | 0.6645 | 0.8080 | 0.8080 | 0.6940 | 0.9497 | 0.8290 | | 2 | Germany | Edelman... | 0.8152 | 0.8350 | 0.6763 | 0.8164 | 0.8152 | 0.7035 | 0.9530 | 0.8350 | | 3 | Germany | Edelman... | 0.8100 | 0.8295 | 0.6689 | 0.8088 | 0.8100 | 0.6971 | 0.9514 | 0.8295 | | 4 | Germany | Edelman... | 0.8149 | 0.8343 | 0.6747 | 0.8138 | 0.8149 | 0.7033 | 0.9532 | 0.8343 | | 5 | Korea | Lee HY,... | 0.7872 | 0.8123 | 0.6303 | 0.7861 | 0.7872 | 0.6662 | 0.9397 | 0.8123 | | 6 | Portugal (North) | Pereira... | 0.7976 | 0.8210 | 0.6475 | 0.7976 | 0.7976 | 0.6800 | 0.9446 | 0.8210 | | 7 | Rio de Janeiro, Brazil | Genetic... | 0.8170 | 0.8367 | 0.6774 | 0.8169 | 0.8170 | 0.7057 | 0.9537 | 0.8367 | | 8 | Spain (Valencia) | Aler M,... | 0.7649 | 0.7928 | 0.6019 | 0.7646 | 0.7649 | 0.6386 | 0.9291 | 0.7928 | | 9 | São Paulo, Brazil | Genetic... | 0.7940 | 0.8167 | 0.6445 | 0.7937 | 0.7940 | 0.6758 | 0.9438 | 0.8167 | | 10 | Vitória, Brazil | Genetic... | 0.8133 | 0.8326 | 0.6734 | 0.8133 | 0.8133 | 0.7009 | 0.9527 | 0.8326 |
| 1 |
Belo Horizonte, Brazil |
admixed |
Genetic... |
245 |
0.0057 |
0.0142 |
0.0508 |
0.0313 |
|
0.1274 |
|
0.1642 |
0.0057 |
0.2661 |
|
0.2154 |
0.0766 |
|
0.0227 |
0.0199 |
|
|
|
| 2 |
Germany |
Caucasian (European) |
Edelman... |
306 females |
0.0160 |
0.0380 |
0.0110 |
0.0510 |
|
0.1650 |
|
0.1520 |
|
0.2680 |
|
0.1760 |
0.0770 |
|
0.0380 |
0.0070 |
0.0020 |
|
|
| 3 |
Germany |
Caucasian (European) |
Edelman... |
419 males |
0.0240 |
0.0430 |
0.0260 |
0.0240 |
|
0.1170 |
|
0.1380 |
|
0.2910 |
|
0.2050 |
0.0760 |
|
0.0380 |
0.0100 |
0.0070 |
|
|
| 4 |
Germany |
Caucasian (European) |
Edelman... |
725 |
0.0190 |
0.0400 |
0.0170 |
0.0400 |
|
0.1450 |
|
0.1460 |
|
0.2770 |
|
0.1880 |
0.0770 |
|
0.0380 |
0.0080 |
0.0040 |
|
|
| 5 |
Korea |
Asian (Korean) |
Lee HY,... |
300 |
|
|
0.0070 |
0.0200 |
|
0.1800 |
|
0.1560 |
|
0.2930 |
|
0.1760 |
0.1040 |
|
0.0530 |
0.0040 |
0.0040 |
|
0.0020 |
| 6 |
Portugal (North) |
all |
Pereira... |
347 males |
0.0086 |
0.0202 |
0.0202 |
0.0490 |
|
0.2017 |
|
0.1758 |
|
0.2709 |
|
0.1585 |
0.0720 |
|
0.0202 |
0.0029 |
|
|
|
| 7 |
Rio de Janeiro, Brazil |
admixed |
Genetic... |
261 |
|
0.0049 |
0.0320 |
0.0517 |
0.0025 |
0.1502 |
0.0049 |
0.1429 |
|
0.2586 |
0.0025 |
0.1970 |
0.0985 |
0.0025 |
0.0320 |
0.0123 |
0.0025 |
0.0049 |
|
| 8 |
Spain (Valencia) |
all |
Aler M,... |
145 females |
|
0.0034 |
0.0172 |
0.0379 |
|
0.2000 |
|
0.1310 |
|
0.3310 |
|
0.1828 |
0.0690 |
|
0.0241 |
0.0034 |
|
|
|
| 9 |
São Paulo, Brazil |
admixed |
Genetic... |
250 |
0.0024 |
0.0072 |
0.0145 |
0.0531 |
|
0.1570 |
0.0048 |
0.1377 |
0.0024 |
0.3043 |
|
0.1932 |
0.0725 |
|
0.0362 |
0.0072 |
0.0072 |
|
|
| 10 |
Vitória, Brazil |
admixed |
Genetic... |
245 |
|
0.0198 |
0.0321 |
0.0716 |
|
0.1506 |
0.0074 |
0.1259 |
|
0.2914 |
|
0.1605 |
0.1012 |
|
0.0370 |
0.0025 |
|
|
|
n* - If no information on the sex of the studied individuals is indicated, both sexes were examined.
References
- Aler A, Sanchez-Diz P, Gomes I, Gisbert M, Carracedo A, Amorim A, Gusmao L (2007) Genetic data of 1...
- Bai P, Li YB, Zhou XP, Song XH, Yuan WA, Yan J, Jin B, Zhang J, Hou YP, Wu J (2005) Allele frequenc...
- Cirigliano V, Lewin P, Szpiro-Tapies S, Fuster C, Adinolfi M (2001) Assessment of new markers for t...
- Edelmann J, Szibor R (2005) Validation of the X-linked STR DXS6801. Forensic Science International ...
- Fodor F, Kamory E, Csokay B, Kopa Z, Kiss A, Lantos I, Tisza T (2007) Rapid detection of sex chromo...
- Gomes I, Alves C, Maxzud K, Pereira R, Prata MJ, Sanchez-Diz P, Carracedo A, Amorim A, Gusmao L (20...
- Gomes I, Prinz M, Pereira R, Meyers C, Mikulasovich RS, Amorim A, Carracedo A, Gusmao L (2007) Gene...
- Lee HY, Park MJ, Jeong CK, Lee SY, Yoo JE, Chung U, Choi JH, Kim CY, Shin KJ (2004) Genetic charact...
- Liu QL, Lv DJ, Wu XL, Sun HY, Wu XY, Lu HL (2008) Development of a five ChX STRs loci typing system...
- Pereira R, Gomes I, Amorim A, Gusmao L (2007) Genetic diversity of 10 X chromosome STRs in northern...
- Pico A, Castillo A, Vargas C, Amorim A, Gusmao L (2008) Genetic profile characterization and segreg...
- Robino C, Giolitti A, Gino S, Torre C (2006) Development of two multiplex PCR systems for the analy...
- Szibor R (2007) X-chromosomal markers: past, present and future. Forensic Sci Int Genet 1:93-99
- Szibor R, Edelmann J, Hering S, Plate I, Wittig H, Roewer L, Wiegand P, Cali F, Romano V, Michael M...
- Szibor R, Hering S, Kuhlisch E, Plate I, Demberger S, Krawczak M, Edelmann J (2005) Haplotyping of ...
- Tariq M, Sabir M, Riazuddin S, Riazuddin S (2009) Haplotype analysis of two X-chromosome STR cluste...
- Turrina S, Atzei R, De Leo D (2007) Polymorphism of four X-chromosomal STRs: DXS7423, DXS7424, DXS8...
- Turrina S, Atzei R, Filippini G, De Leo D (2007) Development and forensic validation of a new multi...
NoteNo data.
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News
Based on the review of december 2018, it has been decided in cooperation with the X working group to remove the PI calculation from this website.
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